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(Senior) Scientist, Nanopore

Flagshippioneeringinc

Cambridge, MA USA (FL110) permanent

Posted: March 17, 2026

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Quick Summary

The Senior Scientist is responsible for leading a team of researchers to develop and implement new proteomics platforms, collaborating with cross-functional teams to drive innovation and growth.

Job Description

The Company

Flagship Labs 110 Inc. (FL110) is a privately held, early-stage technology company developing a fully integrated, end-to-end platform to enable next generation proteomics. Our platform integrates groundbreaking innovations in bioengineering, machine learning, and custom microelectronics to offer a level of precision and insight never before achieved.

FL110 is backed by Flagship Pioneering, which brings the courage, long-term vision, and resources needed to realize unreasonable results. We are uniquely cross-functional and collaborative. Our teams thrive in unstructured and creative environments. Therefore, we seek individuals with an inclusive mindset and a diversity of thought.

If this sounds like an environment you’d love to work in, even if you only have some of the experience listed below, please apply.

The Role:

FL110 is seeking a creative and talented (Senior) Scientist, Nanopore to join our team. Leveling is flexible based on experience. This role will focus on developing nanopore sensing technologies and will join a team creating a nanopore based protein reading system.

You will be part of a dynamic, cross-functional team, working closely with chemists, bioinformaticians, software developers, and hardware engineers. The ideal candidate has a strong background in nanopore technology, specifically with protein translocation, as well as either experience in biotech industry or a record of scientific achievement.

Key Responsibilities

• Conduct advanced research in nanopore technology to drive technological advancements and deliver impactful results

• Develop and implement innovative research strategies and methodologies

• Collaborate with cross-functional teams to align research activities with company objectives

• Manage resources and timelines effectively

• Foster a culture of innovation and scientific excellence within the team

• Collaborate with internal and external stakeholders, including academic institutions, industry partners, and regulatory bodies

• Present research findings at scientific conferences and contribute to patent applications

• Communicate complex scientific concepts and project updates to diverse audiences, including non-scientific stakeholders

Basic Qualifications

• Ph.D. in Physics, Molecular Biology, or related field

• Demonstrated experience in nanopore experimentation and protein translocation

• Experience with python-based data analysis and R

• Proven track record of scientific achievements demonstrated through publications, patents, and successful project completions

• Strong leadership and project management skills

• Excellent problem-solving abilities, analytical skills, and attention to detail

• Strong communication skills, both written and verbal, with the ability to convey complex scientific information to diverse audiences

• Ability to work independently and collaboratively in a fast-paced, dynamic environment

Nice-to-Haves

• Demonstrated expertise in protein biochemistry including protein expression and purification

Who Will Love This Job

• A rigorous individual with a curious mind and a love of learning who enjoys working in a fast-paced environment with a driven and collaborative team

About Flagship Pioneering

Flagship Pioneering is a bioplatform innovation company that invents and builds platform companies, each with the potential for multiple products that transform human health or sustainability. Since its launch in 2000, Flagship has originated and fostered more than 100 scientific ventures, resulting in more than $90 billion in aggregate value. Many of the companies Flagship has founded have addressed humanity’s most urgent challenges: vaccinating billions of people against COVID-19, curing intractable diseases, improving human health, preempting illness, and feeding the world by improving the resiliency and sustainability of agriculture. Flagship has been recognized twice on FORTUNE’s “Change the World” list, an annual ranking of companies that have made a positive social and environmental impact through activities that are part of their core business strategies, and has been twice named to Fast Company’s annual list of the World’s Most Innovative Companies. Learn more about Flagship at www.flagshippioneering.com.

Flagship Pioneering is committed to equal employment opportunity regardless of race, color, ancestry, religion, sex, national origin, sexual orientation, age, citizenship, marital status, disability, gender identity or Veteran status.

At Flagship, we recognize there is no perfect candidate. If you have some of the experience listed above but not all, please apply anyway. Experience comes in many forms, skills are transferable, and passion goes a long way. We are dedicated to building diverse and inclusive teams and look forward to learning more about your unique background.

Recruitment & Staffing Agencies: Flagship Pioneering and its affiliated Flagship Lab companies (collectively, “FSP”) do not accept unsolicited resumes from any source other than candidates. The submission of unsolicited resumes by recruitment or staffing agencies to FSP or its employees is strictly prohibited unless contacted directly by Flagship Pioneering’s internal Talent Acquisition team. Any resume submitted by an agency in the absence of a signed agreement will automatically become the property of FSP, and FSP will not owe any referral or other fees with respect thereto.

The salary range for this role is $100,000 - $181,500. Compensation for the role will depend on a number of factors, including a candidate’s qualifications, skills, competencies, and experience. FL110 currently offers healthcare coverage, annual incentive program, retirement benefits and a broad range of other benefits. Compensation and benefits information is based on FL110's good faith estimate as of the date of publication and may be modified in the future.

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