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Manager, Clinical Site Budgets

Fatetherapeutics

San Diego, CA permanent

Posted: January 31, 2026

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Quick Summary

Manages clinical site budgets for clinical trials, ensuring alignment with protocol requirements, timelines, and financial objectives.

Job Description

Fate Therapeutics is seeking an experienced Manager of Clinical Site Budgets to independently manage the full lifecycle of clinical contracting and site budgeting. This role requires strong financial acumen and hands-on expertise with Master Service Agreements (MSAs), Clinical Trial Agreements (CTAs) Statements of Work (SOWs), and related clinical agreements. Working in close partnership with Clinical Operations, Clinical Development, Legal, Procurement, and Finance, this role ensures that budgets and contracts are aligned with protocol requirements, study timelines, and financial objectives. The ideal candidate is a detail-oriented, analytically driven professional who brings sound commercial judgment, proactively assesses risk, challenges assumptions, and ensures agreements are commercially viable, legally compliant, and operationally executable. This is a full-time, exempt position located at our corporate headquarters in San Diego, CA.


Responsibilities:
• Partner with Clinical Operations, Clinical Development, Finance and external parties to develop study-specific site budget templates and negotiation parameters.
• Develop, review, and negotiate clinical trial site budgets in alignment with fair market value (FMV) guidelines and study specific parameters.
• Lead or support contract negotiations within approved financial and legal parameters.
• Manage the end-to-end contract lifecycle, including Clinical Trial Agreements (CTA), Master Services Agreements (MSA), Statements of Work (SOW), amendments, and change orders.
• Partner with Clinical Operations and Legal to develop site contracting timelines, documents, track progress and provide regular updates to study teams and internal stakeholders.
• Manage the site clinical trial agreement (CTA) development timeline.
• Partner closely with Legal on contract review, redlines, risk assessment, and resolution of contractual issues.
• Review and analyze budgets, payment terms, milestones, and pass-through costs to ensure accuracy and alignment between executed contracts, approved budgets, and forecasts.
• Monitor and track contract and budget changes that impact scope, cost, or timelines; escalate risks and issues as appropriate.
• Utilize internal and external benchmarking data to perform site budget analyses and support negotiation recommendations.
• Support study-level budgeting, forecasting, and variance management activities as needed.


Qualifications:
• BS/BA degree and a minimum of 6 years of relevant and progressive experience.
• 4+ years of direct clinical site budget negotiation experience.
• Deep understanding of the drug development process and cross-functional responsibilities.
• Knowledgeable in the use of industry benchmarking data sets (e.g., Grantplan, Medicare, etc.).
• Proven track record of supporting financial processes, including budgeting/forecasting and variance management.
• Effective and collaborative problem-solving skills.
• Ability to multi-task within and across projects and prioritize and manage timelines effectively.
• Strong analytical and modeling skills and able to make data-driven recommendations.
• Strong interpersonal, communication and presentation skills to be able to engage with all levels both internally and externally.
• Able to apply good judgement and professional expertise in new situations.
• Experience in pharmaceutical/biotech industry required.
• Experience with oncology, auto-immune, or cell-therapy preferred.
• Experience with US and global site budgets preferred.
• Experience with complex trial designs preferred.


Working conditions & physical requirements:
• This is an onsite position at company headquarters with the expectation to work onsite during business hours, a minimum of 4 days per week.
• Travel may be required (up to 20%)​.
• Subject to extended periods of sitting and standing, vision to monitor, and moderate noise levels. ​


Compensation:
• The salary offer will be based on a variety of factors, including level, experience, qualifications, internal equity, and location.
• Fate offers a competitive employment package that includes an annual bonus, equity, and a generous benefits package.
• The anticipated salary range for this role is $140,000 - $160,000


The preceding job description indicates the general nature and level of work performed by employees within this classification. Additional and incidental duties related to the primary duties may be required from time to time.

Equal Employment Opportunity
Fate Therapeutics, Inc. is an equal opportunity employer. We value diversity and are committed to creating an inclusive environment for all employees.

Privacy Notice
To learn about how Fate collects and uses job application information, please visit Fate's online Privacy Notice.

About Fate Therapeutics, Inc.
Fate Therapeutics is a clinical-stage biopharmaceutical company dedicated to bringing a pipeline of induced pluripotent stem cell (iPSC)-derived cellular immunotherapies to patients. Using its proprietary iPSC product platform, the Company has established a leadership position in creating multiplexed-engineered master iPSC lines and in the manufacture and clinical development of off-the-shelf, iPSC-derived cell products. The Company’s pipeline includes iPSC-derived T-cell and natural killer (NK) cell product candidates, which are selectively designed, incorporate novel synthetic controls of cell function, and are intended to deliver multiple therapeutic mechanisms to patients. Fate Therapeutics is headquartered in San Diego, CA. For more information, please visit www.fatetherapeutics.com.

⚠️ Recruitment Fraud Alert

Recently, we have been made aware of unauthorized individuals falsely presenting themselves as Fate Therapeutics employees or recruiters as part of online scams or phishing attempts. Impersonators may use the Fate Therapeutics name and logo, as well as employee names and job titles, to gain a job seeker’s personal or banking information or to request payment as a condition of being considered for a position at the company. Fate Therapeutics and its employees are not involved in these scams.

Here are a few things to be aware of to help identify recruitment fraud:
- Our Talent Acquisition team only corresponds from our @fatetherapeutics.com domain.
- At no stage in our hiring process will we require payment or ask you to make deposits in your bank account.
- We will only ask for personal information when applying for a position via our Careers page or thereafter.
- At no stage during our hiring process will we ask you to click a link to begin a one-way video interview.
- We do not use Google Hangouts, WhatsApp, or other third-party messaging platforms to recruit candidates or conduct interviews.

Please exercise caution. If something feels off about your interactions, we encourage you to contact us at [email protected] to confirm the authenticity of the message. Your security is important to us, and we appreciate your vigilance.

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