LIMS Systems Engineer (Contract)

POSITION DURATION: One year contract role with potential to extend or convert to FTE based on performance and business needs

The LIMS Systems Engineer will support configuration, implementation, and optimization of the LabKey LIMS platform. This role will partner with RUO operations, data engineering, and the LabKey LIMS vendor team to translate RUO workflows into system configurations, implement process improvements, support production releases, and enable reporting and automation capabilities.

This position requires strong analytical skills, prior LIMS experience, workflow documentation expertise, and the ability to work cross-functionally to ensure successful system adoption and operational efficiency.

PRIMARY RESPONSIBILITIES:

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Partner with RUO stakeholders to review and document RUO workflows and translate them into scalable LabKey LIMS configurations

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Configure and maintain LabKey LIMS modules, including sample tracking, metadata models, workflow states, user roles, and permissions

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Develop process flow diagrams, functional specifications, and configuration documentation

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Support system validation activities including user acceptance testing (UAT), acceptance demos, and release readiness

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Collaborate with the LabKey vendor on implementation details, configuration best practices, feature enhancements, and issue resolution

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Support production releases, change management activities, and post-release monitoring

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Identify opportunities for process improvement, workflow automation, and data standardization

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Support integration efforts between LabKey LIMS and upstream/downstream systems, including instruments, data pipelines and reporting tools

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Perform SQL queries, data validation checks, and basic scripting to support configuration, reporting, and automation needs

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Troubleshoot workflow, data integrity, and configuration issues

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Communicate effectively with cross-functional teams including R&D, laboratory operations, data engineering, software engineering, and quality

QUALIFICATIONS:

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Bachelor’s degree in biomedical engineering, computer science, bioinformatics, life sciences, or related field; or equivalent experience

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2+ years of experience supporting LIMS implementation, configuration, or laboratory systems

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Experience working with LabKey LIMS or similar LIMS system strongly preferred

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Experience in laboratory workflow mapping and system translation required

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Experience in complaint or RUO laboratory environments preferred

KNOWLEDGE, SKILLS, AND ABILITIES:

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Hands-on experience configuring LIMS platforms (LabKey strongly preferred)

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Strong understanding of laboratory workflows, sample lifecycle management, and metadata modeling

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Experience translating business processes into system configurations and technical specifications

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Ability to create process flow diagrams (Visio, Lucidchart, Miro, etc.)

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Strong SQL skills and familiarity with relational database structures

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Ability to write scripts in Python or similar languages for data validation, automation, and reporting support

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Experience integrating laboratory instruments with LIMS platforms via APIs, file-based integrations, or middleware solutions

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Working knowledge of RESTful APIs, JSON/XML payloads, authentication mechanisms, and data exchange standards

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Experience supporting instrument data ingestion, transformation, validation, and automated workflow triggers

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Familiarity with system integrations between LIMS and upstream/downstream systems (data pipelines, analytics platforms, reporting tools)

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Experience supporting UAT, system validation, and production release cycles

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Familiarity with 21 CFR Part 11, ALCOA+, HIPAA, and data integrity principles preferred

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Strong troubleshooting and root cause analysis skills

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Excellent verbal and written communication skills

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Ability to prioritize, multitask, and operate in a fast-paced implementation environment

The pay range is listed and actual compensation packages are based on a wide array of factors unique to each candidate, including but not limited to skill set, years & depth of experience, certifications and specific office location. This may differ in other locations due to cost of labor considerations.
Remote USA
$70—$85 USD

OUR OPPORTUNITY

Natera™ is a global leader in cell-free DNA (cfDNA) testing, dedicated to oncology, women’s health, and organ health. Our aim is to make personalized genetic testing and diagnostics part of the standard of care to protect health and enable earlier and more targeted interventions that lead to longer, healthier lives.

The Natera team consists of highly dedicated statisticians, geneticists, doctors, laboratory scientists, business professionals, software engineers and many other professionals from world-class institutions, who care deeply for our work and each other. When you join Natera, you’ll work hard and grow quickly. Working alongside the elite of the industry, you’ll be stretched and challenged, and take pride in being part of a company that is changing the landscape of genetic disease management.

WHAT WE OFFER

Competitive Benefits - Employee benefits include comprehensive medical, dental, vision, life and disability plans for eligible employees and their dependents. Additionally, Natera employees and their immediate families receive free testing in addition to fertility care benefits. Other benefits include pregnancy and baby bonding leave, 401k benefits, commuter benefits and much more. We also offer a generous employee referral program!

For more information, visit www.natera.com.

Natera is proud to be an Equal Opportunity Employer. We are committed to ensuring a diverse and inclusive workplace environment, and welcome people of different backgrounds, experiences, abilities and perspectives. Inclusive collaboration benefits our employees, our community and our patients, and is critical to our mission of changing the management of disease worldwide.

All qualified applicants are encouraged to apply, and will be considered without regard to race, color, religion, gender, gender identity or expression, sexual orientation, national origin, genetics, age, veteran status, disability or any other legally protected status. We also consider qualified applicants regardless of criminal histories, consistent with applicable laws.

If you are based in California, we encourage you to read this important information for California residents.

Link: https://www.natera.com/notice-of-data-collection-california-residents/

Please be advised that Natera will reach out to candidates with a @natera.com email domain ONLY. Email communications from all other domain names are not from Natera or its employees and are fraudulent. Natera does not request interviews via text messages and does not ask for personal information until a candidate has engaged with the company and has spoken to a recruiter and the hiring team. Natera takes cyber crimes seriously, and will collaborate with law enforcement authorities to prosecute any related cyber crimes.

For more information:
- BBB announcement on job scams
- FBI Cyber Crime resource page